TF_ChIP-seq_ENCSR429XTR
TF_ChIP-seq ENCSR429XTR [biosample_summary="Homo sapiens K562" and target="TARDBP"]
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| Id: | TF_ChIP-seq/ENCSR429XTR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR429XTR [biosamplesummary="Homo sapiens K562" and target="TARDBP"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN952KLE|/analyses/ENCAN952KLE/} has in progress subobject document {f5688567-ac1b-47f0-9138-8693ca725ab3|/documents/f5688567-ac1b-47f0-9138-8693ca725ab3/} audit_internal_action: Released analysis {ENCAN952KLE|/analyses/ENCAN952KLE/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF354NXH|/files/ENCFF354NXH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 11806197 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TARDBP-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF073WKE|/files/ENCFF073WKE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 12126452 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TARDBP-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF354NXH|/files/ENCFF354NXH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF354NXH|/files/ENCFF354NXH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.02. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF073WKE|/files/ENCFF073WKE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF073WKE|/files/ENCFF073WKE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.48. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR429XTR | float |
TF_ChIP-seq_ENCSR429XTR |
TF_ChIP-seq ENCSR429XTR [biosample_summary="Homo sapiens K562" and target="TARDBP"]
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[4.57, 408] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF564QOL.bed.gz | 159.01 KB | 80db9d2c06552dda0548fbb8e482464a |
| ENCFF564QOL.bed.gz.dvc | 100.0 B | e91a8159e9d233ed4a378cdedf929260 |
| ENCFF564QOL.tabix.bed.gz | 115.29 KB | 92bd4c83b53035410ff56977a564bd95 |
| ENCFF564QOL.tabix.bed.gz.dvc | 106.0 B | 76eb0649db3ea3145edb2abad4a8a233 |
| ENCFF564QOL.tabix.bed.gz.tbi | 60.83 KB | 45036828ebd9f5c5ee2763307cf1a71f |
| ENCFF564QOL.tabix.bed.gz.tbi.dvc | 109.0 B | 9a3d3efd01265726d48667efcfbfc319 |
| genomic_resource.yaml | 5.21 KB | ecacd7fbb88a8fff5e236d91372bd6cc |
| genomic_resource_original.yaml | 5.11 KB | 580de4abbeb6b5868e5160578c25dbbb |
| statistics/ |