TF_ChIP-seq_ENCSR428LOB
TF_ChIP-seq ENCSR428LOB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZZZ3" and target="ZZZ3"]
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| Id: | TF_ChIP-seq/ENCSR428LOB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR428LOB [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZZZ3" and target="ZZZ3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZZZ3 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN317GOD|/analyses/ENCAN317GOD/} has in progress subobject document {38fa86f2-5d5a-4ad4-bfed-4abaf9e88371|/documents/38fa86f2-5d5a-4ad4-bfed-4abaf9e88371/} audit_internal_action: Released analysis {ENCAN317GOD|/analyses/ENCAN317GOD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF912HBT|/files/ENCFF912HBT/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF912HBT|/files/ENCFF912HBT/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.70. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF791UUM|/files/ENCFF791UUM/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.47 and a self consistency ratio of 2.86. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF784AAE|/files/ENCFF784AAE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.47 and a self consistency ratio of 2.86. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR428LOB | float |
TF_ChIP-seq_ENCSR428LOB |
TF_ChIP-seq ENCSR428LOB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZZZ3" and target="ZZZ3"]
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[9.78, 317] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF791UUM.bed.gz | 155.02 KB | 7641d8084425861d08e8b8436ca42286 |
| ENCFF791UUM.bed.gz.dvc | 100.0 B | 1842c520d7a843b926d71b739e20ee64 |
| ENCFF791UUM.tabix.bed.gz | 116.99 KB | d219a50865770e57138ed587fa0d06a9 |
| ENCFF791UUM.tabix.bed.gz.dvc | 106.0 B | e29018b1c03c701a54870598b138224d |
| ENCFF791UUM.tabix.bed.gz.tbi | 61.08 KB | 0d65b68d263bc919d3639af54590d960 |
| ENCFF791UUM.tabix.bed.gz.tbi.dvc | 109.0 B | f0c4046c1b4159358844cb6700d931f6 |
| genomic_resource.yaml | 4.21 KB | b1177591951a9c06cbb064879f52c262 |
| genomic_resource_original.yaml | 4.05 KB | 4862500633ca1882aaeba8541f3a0b90 |
| statistics/ |