TF_ChIP-seq_ENCSR427XYP
TF_ChIP-seq ENCSR427XYP [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF740" and target="ZNF740"]
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| Id: | TF_ChIP-seq/ENCSR427XYP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR427XYP [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF740" and target="ZNF740"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF740 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN950LFQ|/analyses/ENCAN950LFQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF385NDY|/files/ENCFF385NDY/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF385NDY|/files/ENCFF385NDY/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.52. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR427XYP | float |
TF_ChIP-seq_ENCSR427XYP |
TF_ChIP-seq ENCSR427XYP [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF740" and target="ZNF740"]
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[9.4, 640] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF959SMC.bed.gz | 245.47 KB | c4629ee079fe91c3549958447238a8cd |
| ENCFF959SMC.bed.gz.dvc | 100.0 B | d58f5132654607342ebf95d9cc38337d |
| ENCFF959SMC.tabix.bed.gz | 185.03 KB | 774bc4c757b25fc8c3fb5f74ecd3f8d3 |
| ENCFF959SMC.tabix.bed.gz.dvc | 106.0 B | f9df1488056bd83232e8859e40fc1acc |
| ENCFF959SMC.tabix.bed.gz.tbi | 82.44 KB | bb3e7d03a0e679d12da1b3a862a04eaa |
| ENCFF959SMC.tabix.bed.gz.tbi.dvc | 109.0 B | ae00b08810dee96e0fb77cfe157a9f3e |
| genomic_resource.yaml | 2.97 KB | 32cd59644cf4a9c7167d5bba4b9fd3b9 |
| genomic_resource_original.yaml | 2.8 KB | 1fea90dd07717d9cca6f3bd6b7a0624f |
| statistics/ |