TF_ChIP-seq_ENCSR427WZJ
TF_ChIP-seq ENCSR427WZJ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF143" and target="ZNF143"]
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| Id: | TF_ChIP-seq/ENCSR427WZJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR427WZJ [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF143" and target="ZNF143"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF143 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN904PNN|/analyses/ENCAN904PNN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF115IEU|/files/ENCFF115IEU/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF115IEU|/files/ENCFF115IEU/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.77. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR427WZJ | float |
TF_ChIP-seq_ENCSR427WZJ |
TF_ChIP-seq ENCSR427WZJ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF143" and target="ZNF143"]
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[11, 919] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF596HNP.bed.gz | 137.19 KB | 1dca3862eddaf90f497f993c1033238a |
| ENCFF596HNP.bed.gz.dvc | 100.0 B | 84c360b3cf0bc1de0122aa801245f0e0 |
| ENCFF596HNP.tabix.bed.gz | 99.41 KB | dbd1c1defb45cf0d6d0af29cc6399b61 |
| ENCFF596HNP.tabix.bed.gz.dvc | 106.0 B | 106e13bad563dc7c96434ac99e39ff85 |
| ENCFF596HNP.tabix.bed.gz.tbi | 54.1 KB | 6d8ab0b0204f5278d1a9e3340bf3a9dd |
| ENCFF596HNP.tabix.bed.gz.tbi.dvc | 109.0 B | 57cee7824dcde86bbb45c0bfa5722e59 |
| genomic_resource.yaml | 2.97 KB | 56e5260703fe5104b41d8a5be70ca9bb |
| genomic_resource_original.yaml | 2.8 KB | 93d87785e08828b9786236a918244168 |
| statistics/ |