TF_ChIP-seq_ENCSR426URK
TF_ChIP-seq ENCSR426URK [biosample_summary="Homo sapiens K562" and target="AFF1"]
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| Id: | TF_ChIP-seq/ENCSR426URK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR426URK [biosamplesummary="Homo sapiens K562" and target="AFF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN059TUN|/analyses/ENCAN059TUN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN059TUN|/analyses/ENCAN059TUN/} has in progress subobject document {6bf13e05-753b-4d58-8fc3-dbb13e966f44|/documents/6bf13e05-753b-4d58-8fc3-dbb13e966f44/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF221QNV|/files/ENCFF221QNV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF221QNV|/files/ENCFF221QNV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.13. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF649LNM|/files/ENCFF649LNM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF649LNM|/files/ENCFF649LNM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.60. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR426URK | float |
TF_ChIP-seq_ENCSR426URK |
TF_ChIP-seq ENCSR426URK [biosample_summary="Homo sapiens K562" and target="AFF1"]
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[11.3, 4.35e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF195YGC.bed.gz | 332.44 KB | c0ae633f84ea5a7005da9e223126ef91 |
| ENCFF195YGC.bed.gz.dvc | 100.0 B | 8f7ad5fde0058b012f48162da3953d0e |
| ENCFF195YGC.tabix.bed.gz | 249.61 KB | b7106b042153c8d14f3a8b1ef3794edf |
| ENCFF195YGC.tabix.bed.gz.dvc | 106.0 B | 36939216240dbef903157e4cfb541d87 |
| ENCFF195YGC.tabix.bed.gz.tbi | 113.71 KB | 7dd5c4ffb962901e82fc4c839fe8b4dc |
| ENCFF195YGC.tabix.bed.gz.tbi.dvc | 110.0 B | 04db1fb2fa36c2102c87f3435b1eb887 |
| genomic_resource.yaml | 4.72 KB | facf007f944d2656474a2f5f97ecc78f |
| genomic_resource_original.yaml | 4.63 KB | ca8f5e76df85f7eb354595944447e7be |
| statistics/ |