TF_ChIP-seq_ENCSR426MDV
TF_ChIP-seq ENCSR426MDV [biosample_summary="Homo sapiens K562" and target="MIER1"]
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| Id: | TF_ChIP-seq/ENCSR426MDV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR426MDV [biosamplesummary="Homo sapiens K562" and target="MIER1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN457AIC|/analyses/ENCAN457AIC/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF163YZB|/files/ENCFF163YZB/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Processed alignments file {ENCFF639CLN|/files/ENCFF639CLN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 17337006 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting MIER1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF639CLN|/files/ENCFF639CLN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF639CLN|/files/ENCFF639CLN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.54. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR426MDV | float |
TF_ChIP-seq_ENCSR426MDV |
TF_ChIP-seq ENCSR426MDV [biosample_summary="Homo sapiens K562" and target="MIER1"]
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[13.7, 4.57e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF163YZB.bed.gz | 183.25 KB | 7852cd66283e8e5a48b2b02aaece67e0 |
| ENCFF163YZB.bed.gz.dvc | 100.0 B | 43394cb20760f82e2cee2dd812cc9977 |
| ENCFF163YZB.tabix.bed.gz | 126.58 KB | 52f4963c5be9f2ce1e5bf6b8b2940530 |
| ENCFF163YZB.tabix.bed.gz.dvc | 106.0 B | a8113cf0a0030c9fc27d03a0f2f0eecc |
| ENCFF163YZB.tabix.bed.gz.tbi | 68.52 KB | 43dcd562a51d799e686001af5e7500da |
| ENCFF163YZB.tabix.bed.gz.tbi.dvc | 109.0 B | e39ec16b786dc6d6c9a62fe78fcbdbdb |
| genomic_resource.yaml | 3.33 KB | ee62ea37ae798b64a55557678874c517 |
| genomic_resource_original.yaml | 3.23 KB | c7a0307dc58ce8b0df74578f89c0cf44 |
| statistics/ |