TF_ChIP-seq_ENCSR423TVD
TF_ChIP-seq ENCSR423TVD [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SNAPC5" and target="SNAPC5"]
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| Id: | TF_ChIP-seq/ENCSR423TVD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR423TVD [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SNAPC5" and target="SNAPC5"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SNAPC5 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN766MGI|/analyses/ENCAN766MGI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF620QSP|/files/ENCFF620QSP/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF620QSP|/files/ENCFF620QSP/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.29. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF494YYL|/files/ENCFF494YYL/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF494YYL|/files/ENCFF494YYL/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.59. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF554KYQ|/files/ENCFF554KYQ/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 1.40 and a self consistency ratio of 2.99. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR423TVD | float |
TF_ChIP-seq_ENCSR423TVD |
TF_ChIP-seq ENCSR423TVD [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SNAPC5" and target="SNAPC5"]
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[9.39, 910] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF554KYQ.bed.gz | 134.4 KB | 4814f45661756054207671961a0b473d |
| ENCFF554KYQ.bed.gz.dvc | 100.0 B | d5cb32fd973633b3ec50d95256907ea4 |
| ENCFF554KYQ.tabix.bed.gz | 97.66 KB | bea666a7bc40d174eca1dd30cddfb5f1 |
| ENCFF554KYQ.tabix.bed.gz.dvc | 105.0 B | f80e7eb37cb8d81dfd29e737b46ae9db |
| ENCFF554KYQ.tabix.bed.gz.tbi | 52.67 KB | 6f8b5b4862ae469f47833e3a02ba2bd8 |
| ENCFF554KYQ.tabix.bed.gz.tbi.dvc | 109.0 B | 1f06cc2f8fa4b665b35bb925443e4e16 |
| genomic_resource.yaml | 4.76 KB | 2c9d41f4942a87f4301b9978adef323d |
| genomic_resource_original.yaml | 4.59 KB | 2624c425d1777b4e9d8d8db0babe461d |
| statistics/ |