| Id: | TF_ChIP-seq/ENCSR422VAG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR422VAG [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN29" and target="ZSCAN29"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN29 output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN776YPP|/analyses/ENCAN776YPP/} has in progress subobject document {91ed6a10-342e-4a86-9633-945720ae8490|/documents/91ed6a10-342e-4a86-9633-945720ae8490/} audit_internal_action: Released analysis {ENCAN776YPP|/analyses/ENCAN776YPP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF437TVA|/files/ENCFF437TVA/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF437TVA|/files/ENCFF437TVA/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.91. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF903XZO|/files/ENCFF903XZO/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF903XZO|/files/ENCFF903XZO/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.35. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR422VAG | float |
TF_ChIP-seq_ENCSR422VAG |
TF_ChIP-seq ENCSR422VAG [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN29" and target="ZSCAN29"]
|
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[10.6, 640] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF896PGF.bed.gz | 295.49 KB | 0e3e1973b56c343a5f2a4a25a7d879d4 |
| ENCFF896PGF.bed.gz.dvc | 100.0 B | 8547f63d8c348d5a5e5a88171a5a20e1 |
| ENCFF896PGF.tabix.bed.gz | 243.21 KB | 427acb8ff033e99c4f3a5340ad6a5768 |
| ENCFF896PGF.tabix.bed.gz.dvc | 106.0 B | e748a462f9641ce6b342836bb4be8b78 |
| ENCFF896PGF.tabix.bed.gz.tbi | 94.81 KB | 78bf249f3173c25be47b8cca37aad543 |
| ENCFF896PGF.tabix.bed.gz.tbi.dvc | 109.0 B | 8300a13ab04ae87320772d0ef0fa2580 |
| genomic_resource.yaml | 4.47 KB | 719994033cd45f054649b0cab25a1bc3 |
| genomic_resource_original.yaml | 4.3 KB | 5a5d25617d8c6dd7040fcf99eb24d9f7 |
| statistics/ |