TF_ChIP-seq_ENCSR421ADK
TF_ChIP-seq ENCSR421ADK [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THAP7" and target="THAP7"]
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| Id: | TF_ChIP-seq/ENCSR421ADK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR421ADK [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THAP7" and target="THAP7"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens THAP7 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN372XXO|/analyses/ENCAN372XXO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF277NIO|/files/ENCFF277NIO/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF277NIO|/files/ENCFF277NIO/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.39. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR421ADK | float |
TF_ChIP-seq_ENCSR421ADK |
TF_ChIP-seq ENCSR421ADK [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THAP7" and target="THAP7"]
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[14.7, 1.14e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF986ZVU.bed.gz | 220.32 KB | b3fe6b7fdf7a47f10b1c1c4ce9da48d6 |
| ENCFF986ZVU.bed.gz.dvc | 100.0 B | 481043d0a3aaa7606a671b45a7f499bc |
| ENCFF986ZVU.tabix.bed.gz | 169.23 KB | 5c1002910c702a9c3fd26d4d75bf2772 |
| ENCFF986ZVU.tabix.bed.gz.dvc | 106.0 B | d5512aa09a2308b21c000f4f8c4941b7 |
| ENCFF986ZVU.tabix.bed.gz.tbi | 76.03 KB | 578984148c5143d17d3146a4c17a4fbd |
| ENCFF986ZVU.tabix.bed.gz.tbi.dvc | 109.0 B | 9ed969bc0e88bfbb9343a72c52351d2b |
| genomic_resource.yaml | 2.96 KB | 0655b54aea282fc0c454a0e9f5495fc7 |
| genomic_resource_original.yaml | 2.8 KB | ee1d9f064583f03a67c131dc0fb8da9f |
| statistics/ |