TF_ChIP-seq_ENCSR419VVI
TF_ChIP-seq ENCSR419VVI [biosample_summary="Homo sapiens A549 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF624" and target="ZNF624"]
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| Id: | TF_ChIP-seq/ENCSR419VVI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR419VVI [biosamplesummary="Homo sapiens A549 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF624" and target="ZNF624"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF624 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN040JDX|/analyses/ENCAN040JDX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN040JDX|/analyses/ENCAN040JDX/} has in progress subobject document {4fd5c4e8-8a73-46a3-9bcc-73b9bcc78635|/documents/4fd5c4e8-8a73-46a3-9bcc-73b9bcc78635/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF007PYT|/files/ENCFF007PYT/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF007PYT|/files/ENCFF007PYT/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.07. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF342TXG|/files/ENCFF342TXG/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF342TXG|/files/ENCFF342TXG/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.53. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR419VVI | float |
TF_ChIP-seq_ENCSR419VVI |
TF_ChIP-seq ENCSR419VVI [biosample_summary="Homo sapiens A549 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF624" and target="ZNF624"]
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[12.9, 5.32e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF439SWX.bed.gz | 123.7 KB | 522480603edc00c613e8558bb5c31de3 |
| ENCFF439SWX.bed.gz.dvc | 100.0 B | 3aaedff00aa992da8fe6522e338d5495 |
| ENCFF439SWX.tabix.bed.gz | 81.77 KB | bc02d5e0be1c7e1b05ef0be61ec950af |
| ENCFF439SWX.tabix.bed.gz.dvc | 105.0 B | 325e23cde5d0cbf19d377d50455f008f |
| ENCFF439SWX.tabix.bed.gz.tbi | 48.59 KB | 19299b1baac54d22c2803318ebe00fb7 |
| ENCFF439SWX.tabix.bed.gz.tbi.dvc | 109.0 B | d6dd908f07ad318d9df1629570a34462 |
| genomic_resource.yaml | 4.45 KB | 9203e27726b828578dc59e21caf1b7a2 |
| genomic_resource_original.yaml | 4.28 KB | c7c17a030631eadda92e07e255ae14df |
| statistics/ |