TF_ChIP-seq_ENCSR419ANE
TF_ChIP-seq ENCSR419ANE [biosample_summary="Homo sapiens Peyer''s patch tissue male adult (37 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR419ANE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR419ANE [biosamplesummary="Homo sapiens Peyer''s patch tissue male adult (37 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN880SGH|/analyses/ENCAN880SGH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN880SGH|/analyses/ENCAN880SGH/} has in progress subobject document {ba416ea7-a179-4b2f-be9e-ab4e6a68bed3|/documents/ba416ea7-a179-4b2f-be9e-ab4e6a68bed3/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF388EXK|/files/ENCFF388EXK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF388EXK|/files/ENCFF388EXK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.45. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR419ANE | float |
TF_ChIP-seq_ENCSR419ANE |
TF_ChIP-seq ENCSR419ANE [biosample_summary="Homo sapiens Peyer''s patch tissue male adult (37 years)" and target="CTCF"]
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[7.77, 3.03e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF631JVL.bed.gz | 690.41 KB | 7811ce0f30a8688eeb06bc6ee0e607fa |
| ENCFF631JVL.bed.gz.dvc | 100.0 B | a05bfd59c886821891779767a2dc3cd1 |
| ENCFF631JVL.tabix.bed.gz | 508.15 KB | 4d055dd14b91cd64f7abf72033bf1405 |
| ENCFF631JVL.tabix.bed.gz.dvc | 106.0 B | dc5780931dd1b763ea31e23d4b5c43be |
| ENCFF631JVL.tabix.bed.gz.tbi | 264.65 KB | ffce72f295e2eb393de1b9279de56609 |
| ENCFF631JVL.tabix.bed.gz.tbi.dvc | 110.0 B | df9d1c39f06b0017200bd787481542b8 |
| genomic_resource.yaml | 3.25 KB | 69ccc0399777d4371603f474533390a1 |
| genomic_resource_original.yaml | 3.12 KB | d8c90bc997ea200e172751da50ddb319 |
| statistics/ |