TF_ChIP-seq_ENCSR417EWD
TF_ChIP-seq ENCSR417EWD [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FUBP3" and target="FUBP3"]
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| Id: | TF_ChIP-seq/ENCSR417EWD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR417EWD [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FUBP3" and target="FUBP3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens FUBP3 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN858YVG|/analyses/ENCAN858YVG/} has in progress subobject document {c9ee1d09-0ece-4173-8005-4400d609309c|/documents/c9ee1d09-0ece-4173-8005-4400d609309c/} audit_internal_action: Released analysis {ENCAN858YVG|/analyses/ENCAN858YVG/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF507WRK|/files/ENCFF507WRK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF507WRK|/files/ENCFF507WRK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.11. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF682TKK|/files/ENCFF682TKK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF682TKK|/files/ENCFF682TKK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.60. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR417EWD | float |
TF_ChIP-seq_ENCSR417EWD |
TF_ChIP-seq ENCSR417EWD [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FUBP3" and target="FUBP3"]
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[9.36, 274] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF953FNE.bed.gz | 138.65 KB | b4d055455888f4da19dc1d37d824a492 |
| ENCFF953FNE.bed.gz.dvc | 100.0 B | 67beff5a451bd84922ff7be2029d8125 |
| ENCFF953FNE.tabix.bed.gz | 108.12 KB | a968c3c218580e10df2f6d89918b5e39 |
| ENCFF953FNE.tabix.bed.gz.dvc | 106.0 B | 744caac2862b1f691ba25768e455c405 |
| ENCFF953FNE.tabix.bed.gz.tbi | 54.16 KB | 79520c2d592104c59c18bc1828689b76 |
| ENCFF953FNE.tabix.bed.gz.tbi.dvc | 109.0 B | 1dbd283815a1e6d880ceca9c51f6d704 |
| genomic_resource.yaml | 4.44 KB | ac0457885a355068cb0bf38a8b7963b3 |
| genomic_resource_original.yaml | 4.28 KB | 44f2c33a29e2aa7fb73732fda854fe63 |
| statistics/ |