TF_ChIP-seq_ENCSR417DKD
TF_ChIP-seq ENCSR417DKD [biosample_summary="Homo sapiens MCF-7" and target="NFXL1"]
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| Id: | TF_ChIP-seq/ENCSR417DKD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR417DKD [biosamplesummary="Homo sapiens MCF-7" and target="NFXL1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN491ZTW|/analyses/ENCAN491ZTW/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF891FAJ|/files/ENCFF891FAJ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.97. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR417DKD | float |
TF_ChIP-seq_ENCSR417DKD |
TF_ChIP-seq ENCSR417DKD [biosample_summary="Homo sapiens MCF-7" and target="NFXL1"]
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[14.8, 1.16e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF839EPV.bed.gz | 43.38 KB | 2ab64fcc59001a92495fc446b93c8748 |
| ENCFF839EPV.bed.gz.dvc | 99.0 B | 37a72f0b31210414bb7330d5fea8ad7d |
| ENCFF839EPV.tabix.bed.gz | 29.06 KB | c28b4a8d3bb1f8a354599999970bac20 |
| ENCFF839EPV.tabix.bed.gz.dvc | 105.0 B | 649ff212005b333f0bf80f75f9165b6b |
| ENCFF839EPV.tabix.bed.gz.tbi | 21.01 KB | e2cefd1bbea02f7bb1f2084d9eef4700 |
| ENCFF839EPV.tabix.bed.gz.tbi.dvc | 109.0 B | c4a1846491c8d2270a116c0497b15e56 |
| genomic_resource.yaml | 1.98 KB | 2b4449ef507e5fedc330cd52c2788de0 |
| genomic_resource_original.yaml | 1.88 KB | 968e573cd26f8a46a83ffcb15326dfeb |
| statistics/ |