TF_ChIP-seq_ENCSR415NNQ
TF_ChIP-seq ENCSR415NNQ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens THAP12" and target="THAP12"]
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| Id: | TF_ChIP-seq/ENCSR415NNQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR415NNQ [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens THAP12" and target="THAP12"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens THAP12 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN124BCE|/analyses/ENCAN124BCE/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF907PQV|/files/ENCFF907PQV/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF907PQV|/files/ENCFF907PQV/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.69. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF972PVP|/files/ENCFF972PVP/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF972PVP|/files/ENCFF972PVP/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.13. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR415NNQ | float |
TF_ChIP-seq_ENCSR415NNQ |
TF_ChIP-seq ENCSR415NNQ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens THAP12" and target="THAP12"]
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[17.3, 2.42e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF206LMB.bed.gz | 183.9 KB | 2036ca74fcdcfde13c277dc7bf70b2b5 |
| ENCFF206LMB.bed.gz.dvc | 100.0 B | d122f5c855a3397ae81192409032a564 |
| ENCFF206LMB.tabix.bed.gz | 123.0 KB | 7ff5b7c0d1fd9b7a6d9fe949d811d030 |
| ENCFF206LMB.tabix.bed.gz.dvc | 106.0 B | 856ebea4d861cc095a58409878662136 |
| ENCFF206LMB.tabix.bed.gz.tbi | 69.26 KB | 864b736747e2429bc1d4fa951d72bbd9 |
| ENCFF206LMB.tabix.bed.gz.tbi.dvc | 109.0 B | 8eed57949d6ea84b379033411aa939b7 |
| genomic_resource.yaml | 4.24 KB | e55ae842898ff46cf00d57dc475b7f7d |
| genomic_resource_original.yaml | 4.07 KB | db555a5413ec008e82b45b83a88814ea |
| statistics/ |