TF_ChIP-seq_ENCSR415MOW
TF_ChIP-seq ENCSR415MOW [biosample_summary="Homo sapiens right lobe of liver tissue female adult (53 years)" and target="POLR2A"]
×
| Id: | TF_ChIP-seq/ENCSR415MOW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR415MOW [biosamplesummary="Homo sapiens right lobe of liver tissue female adult (53 years)" and target="POLR2A"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: pseudoreplicated IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN425BGM|/analyses/ENCAN425BGM/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF394VHK|/files/ENCFF394VHK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF394VHK|/files/ENCFF394VHK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.83. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR415MOW | float |
TF_ChIP-seq_ENCSR415MOW |
TF_ChIP-seq ENCSR415MOW [biosample_summary="Homo sapiens right lobe of liver tissue female adult (53 years)" and target="POLR2A"]
|
|
[7.71, 1.66e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF379TEL.bed.gz | 582.4 KB | 392b174f4bd0d02611ab6508f6334950 |
| ENCFF379TEL.bed.gz.dvc | 100.0 B | 388281ca0635064c4d0a97658048dd3c |
| ENCFF379TEL.tabix.bed.gz | 412.81 KB | ef00bcc32d9a4cf93ef6b280b249a36c |
| ENCFF379TEL.tabix.bed.gz.dvc | 106.0 B | 7c804a025c94a57d744c95478e72184a |
| ENCFF379TEL.tabix.bed.gz.tbi | 145.05 KB | fd6018a0d0304781f4160a5f45c906ed |
| ENCFF379TEL.tabix.bed.gz.tbi.dvc | 110.0 B | d64ff3b6810190413a2169d8e9b9dd9a |
| genomic_resource.yaml | 2.77 KB | 0ca8a981ffa39426a9cc078a78d6afcb |
| genomic_resource_original.yaml | 2.63 KB | 0e8e5b9a882052e17b4e569caecbb8bc |
| statistics/ |