TF_ChIP-seq_ENCSR414WBQ
TF_ChIP-seq ENCSR414WBQ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFIB" and target="NFIB"]
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| Id: | TF_ChIP-seq/ENCSR414WBQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR414WBQ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFIB" and target="NFIB"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens NFIB output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN265YHI|/analyses/ENCAN265YHI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF310KFM|/files/ENCFF310KFM/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF310KFM|/files/ENCFF310KFM/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.24. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF587HGB|/files/ENCFF587HGB/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF587HGB|/files/ENCFF587HGB/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.36. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF127ZZG|/files/ENCFF127ZZG/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline have a rescue ratio of 1.28 and a self consistency ratio of 2.73. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR414WBQ | float |
TF_ChIP-seq_ENCSR414WBQ |
TF_ChIP-seq ENCSR414WBQ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFIB" and target="NFIB"]
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[13.5, 278] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF127ZZG.bed.gz | 46.94 KB | ee7917d87ebd54a7e49a0afcb540b1be |
| ENCFF127ZZG.bed.gz.dvc | 99.0 B | 7f8130d5cf798ae720281ee9c948b4c0 |
| ENCFF127ZZG.tabix.bed.gz | 32.32 KB | d9eb7766dd8c97f2f5f2bec41579f5f4 |
| ENCFF127ZZG.tabix.bed.gz.dvc | 105.0 B | f6cd92fae1ada8a6eb7290057f541753 |
| ENCFF127ZZG.tabix.bed.gz.tbi | 23.81 KB | d0abfbee55618699efa51dc1a49fe641 |
| ENCFF127ZZG.tabix.bed.gz.tbi.dvc | 109.0 B | 5b04d3bbcb78742afd0c6d834f5340fb |
| genomic_resource.yaml | 4.74 KB | 31755d054be7d8a72f6d9f54a6171b00 |
| genomic_resource_original.yaml | 4.58 KB | 2c1078e87621586b34bccd0c2af3033a |
| statistics/ |