TF_ChIP-seq_ENCSR414TPL
TF_ChIP-seq ENCSR414TPL [biosample_summary="Homo sapiens gastroesophageal sphincter tissue male adult (37 years)" and target="POLR2A"]
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| Id: | TF_ChIP-seq/ENCSR414TPL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR414TPL [biosamplesummary="Homo sapiens gastroesophageal sphincter tissue male adult (37 years)" and target="POLR2A"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated IDR thresholded peaks audit_internal_action: File {ENCFF128UUT|/files/ENCFF128UUT/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN755IDY|/analyses/ENCAN755IDY/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF962NMX|/files/ENCFF962NMX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF962NMX|/files/ENCFF962NMX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.23. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR414TPL | float |
TF_ChIP-seq_ENCSR414TPL |
TF_ChIP-seq ENCSR414TPL [biosample_summary="Homo sapiens gastroesophageal sphincter tissue male adult (37 years)" and target="POLR2A"]
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[7.2, 2.13e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF128UUT.bed.gz | 280.76 KB | f3fc5377a4bdc04f306161793b96ad0f |
| ENCFF128UUT.bed.gz.dvc | 100.0 B | d21aed9bde0eb62ce67e656c0ad93e9c |
| ENCFF128UUT.tabix.bed.gz | 209.97 KB | 2027486eb8ee5c88c7df357c108a2ffc |
| ENCFF128UUT.tabix.bed.gz.dvc | 106.0 B | 625421d294a32aed6edd1569c1e7d16d |
| ENCFF128UUT.tabix.bed.gz.tbi | 103.0 KB | 3744e932c20d266fbc4976a848b5be63 |
| ENCFF128UUT.tabix.bed.gz.tbi.dvc | 110.0 B | f811e66fb0a3ab0015cc2e0c26a24749 |
| genomic_resource.yaml | 2.97 KB | 4662d90e02061be603bf1ce7fd302edf |
| genomic_resource_original.yaml | 2.83 KB | 296cda246c9694292053ce7f54461bab |
| statistics/ |