TF_ChIP-seq_ENCSR413AJG
TF_ChIP-seq ENCSR413AJG [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXJ3" and target="FOXJ3"]
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| Id: | TF_ChIP-seq/ENCSR413AJG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR413AJG [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXJ3" and target="FOXJ3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens FOXJ3 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN423WJW|/analyses/ENCAN423WJW/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN423WJW|/analyses/ENCAN423WJW/} has in progress subobject document {1613fe41-2b64-4670-983c-06d7d07d1dda|/documents/1613fe41-2b64-4670-983c-06d7d07d1dda/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF104VOR|/files/ENCFF104VOR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF104VOR|/files/ENCFF104VOR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.89. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF548ZQR|/files/ENCFF548ZQR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.58 and a self consistency ratio of 4.97. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF430OSX|/files/ENCFF430OSX/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.58 and a self consistency ratio of 4.97. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR413AJG | float |
TF_ChIP-seq_ENCSR413AJG |
TF_ChIP-seq ENCSR413AJG [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXJ3" and target="FOXJ3"]
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[11, 373] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF548ZQR.bed.gz | 377.09 KB | 7154336b632e727b2cefc844ab030e7b |
| ENCFF548ZQR.bed.gz.dvc | 100.0 B | 789d53c4910e6c986234d5cb3cda4fcc |
| ENCFF548ZQR.tabix.bed.gz | 287.77 KB | 240ca2d66e738ef98662904d6039d88b |
| ENCFF548ZQR.tabix.bed.gz.dvc | 106.0 B | 64dc7c749d4dfc6b395e4e9af2787162 |
| ENCFF548ZQR.tabix.bed.gz.tbi | 125.78 KB | 3b1f16f997af385419afa0503a3204a9 |
| ENCFF548ZQR.tabix.bed.gz.tbi.dvc | 110.0 B | b06b2bfc6d150315c2fe9f0ef6c0ee74 |
| genomic_resource.yaml | 4.22 KB | 9fa7ebad81814929ec3491afb950b9d6 |
| genomic_resource_original.yaml | 4.06 KB | 724ac46969f6fe613401b6479e560209 |
| statistics/ |