TF_ChIP-seq_ENCSR410FEH
TF_ChIP-seq ENCSR410FEH [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TBX2" and target="TBX2"]
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| Id: | TF_ChIP-seq/ENCSR410FEH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR410FEH [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TBX2" and target="TBX2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens TBX2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN247RKH|/analyses/ENCAN247RKH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN247RKH|/analyses/ENCAN247RKH/} has in progress subobject document {f7ad19cb-214c-4d1b-b233-2070678aa1ea|/documents/f7ad19cb-214c-4d1b-b233-2070678aa1ea/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF180DWH|/files/ENCFF180DWH/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF180DWH|/files/ENCFF180DWH/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.65. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF959SSE|/files/ENCFF959SSE/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF959SSE|/files/ENCFF959SSE/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.01. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF946LHJ|/files/ENCFF946LHJ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.17 and a self consistency ratio of 2.24. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF811TLA|/files/ENCFF811TLA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.17 and a self consistency ratio of 2.24. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR410FEH | float |
TF_ChIP-seq_ENCSR410FEH |
TF_ChIP-seq ENCSR410FEH [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TBX2" and target="TBX2"]
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[15.2, 840] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF946LHJ.bed.gz | 744.8 KB | a603f4a016a93ba6f1b7b64eeb930fc1 |
| ENCFF946LHJ.bed.gz.dvc | 100.0 B | 225f19bb1fd50502baf511238dc8488b |
| ENCFF946LHJ.tabix.bed.gz | 630.86 KB | e64491d8f64d238ccfa3ff462052858f |
| ENCFF946LHJ.tabix.bed.gz.dvc | 106.0 B | 6d8dc1e30b2e287a24ffc934e0e17e71 |
| ENCFF946LHJ.tabix.bed.gz.tbi | 184.75 KB | ce7e391b491854f9d9567b66f15f6b68 |
| ENCFF946LHJ.tabix.bed.gz.tbi.dvc | 110.0 B | e3533baa50dfab081d6a0de6caf38e2c |
| genomic_resource.yaml | 5.48 KB | 6d1cadc28867be725a5ef666873dabcb |
| genomic_resource_original.yaml | 5.32 KB | c5d140eb63894d240945d977e3add35f |
| statistics/ |