TF_ChIP-seq_ENCSR409PXW
TF_ChIP-seq ENCSR409PXW [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF224" and target="ZNF224"]
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| Id: | TF_ChIP-seq/ENCSR409PXW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR409PXW [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF224" and target="ZNF224"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF224 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN694VBS|/analyses/ENCAN694VBS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF242LLQ|/files/ENCFF242LLQ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF242LLQ|/files/ENCFF242LLQ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.17. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF994QIP|/files/ENCFF994QIP/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF994QIP|/files/ENCFF994QIP/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.39. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR409PXW | float |
TF_ChIP-seq_ENCSR409PXW |
TF_ChIP-seq ENCSR409PXW [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF224" and target="ZNF224"]
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[9.17, 439] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF905RSN.bed.gz | 48.5 KB | 41d1dfe12395313de4fe309022a3074c |
| ENCFF905RSN.bed.gz.dvc | 99.0 B | 576f6ed0a38bfba13503ab5b3156ed11 |
| ENCFF905RSN.tabix.bed.gz | 33.58 KB | 972cf89c95bf22a0e39bdf396cb6db62 |
| ENCFF905RSN.tabix.bed.gz.dvc | 105.0 B | 92668aeee8860f8d9394c752c688879b |
| ENCFF905RSN.tabix.bed.gz.tbi | 25.81 KB | 762e73bf024e38bc562e4929ac3bf6b2 |
| ENCFF905RSN.tabix.bed.gz.tbi.dvc | 109.0 B | df29cd4198737347e851e87f426d09f4 |
| genomic_resource.yaml | 4.24 KB | 4d7679b9a2af80046a4bd27378c06112 |
| genomic_resource_original.yaml | 4.07 KB | 34c22a154af70af5571ba7b3124c3e8b |
| statistics/ |