TF_ChIP-seq_ENCSR408JQO
TF_ChIP-seq ENCSR408JQO [biosample_summary="Homo sapiens GM12878" and target="IRF3"]
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| Id: | TF_ChIP-seq/ENCSR408JQO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR408JQO [biosamplesummary="Homo sapiens GM12878" and target="IRF3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN928LDP|/analyses/ENCAN928LDP/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF604AZX|/files/ENCFF604AZX/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Released file {ENCFF604AZX|/files/ENCFF604AZX/} has replaced subobject file {807edb3d-5a8f-43ca-b12a-051467f5f2c6|/files/807edb3d-5a8f-43ca-b12a-051467f5f2c6/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF844CVM|/files/ENCFF844CVM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF844CVM|/files/ENCFF844CVM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.52. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF541BNH|/files/ENCFF541BNH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF541BNH|/files/ENCFF541BNH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR408JQO | float |
TF_ChIP-seq_ENCSR408JQO |
TF_ChIP-seq ENCSR408JQO [biosample_summary="Homo sapiens GM12878" and target="IRF3"]
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[11.6, 1e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF604AZX.bed.gz | 88.46 KB | 85ec6288b02f08e80b393f6e3354c27a |
| ENCFF604AZX.bed.gz.dvc | 99.0 B | dca82baca18cd9be4b848b75e460e400 |
| ENCFF604AZX.tabix.bed.gz | 58.48 KB | 16d3328e4d0529e58ab5ab45b6b4f0ab |
| ENCFF604AZX.tabix.bed.gz.dvc | 105.0 B | 647057fd8188b6d57e3c59a521a93869 |
| ENCFF604AZX.tabix.bed.gz.tbi | 46.5 KB | 20b6686ea5bc99f7438a102d1f36403a |
| ENCFF604AZX.tabix.bed.gz.tbi.dvc | 109.0 B | a307b5fd5e99c39e0e8eeb009b434397 |
| genomic_resource.yaml | 4.34 KB | e264ad0d3a2336b4f1a4a8d19bcd47d2 |
| genomic_resource_original.yaml | 4.24 KB | 9c218dccb3c7fbeea1f2332dbc98af33 |
| statistics/ |