TF_ChIP-seq_ENCSR407MQT
TF_ChIP-seq ENCSR407MQT [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SALL1" and target="SALL1"]
×
| Id: | TF_ChIP-seq/ENCSR407MQT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR407MQT [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SALL1" and target="SALL1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SALL1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN949HHM|/analyses/ENCAN949HHM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF481QPZ|/files/ENCFF481QPZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF481QPZ|/files/ENCFF481QPZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.44. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF818AYT|/files/ENCFF818AYT/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF818AYT|/files/ENCFF818AYT/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.62. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR407MQT | float |
TF_ChIP-seq_ENCSR407MQT |
TF_ChIP-seq ENCSR407MQT [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SALL1" and target="SALL1"]
|
|
[11.4, 671] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF869BHB.bed.gz | 1018.97 KB | a7b8d5873cc350deab186f6d32e2eb63 |
| ENCFF869BHB.bed.gz.dvc | 101.0 B | 86ec2de32eb53e986fed1000f060e0ed |
| ENCFF869BHB.tabix.bed.gz | 795.34 KB | f96cd8e5abd36a7e687b76c757e3c9bf |
| ENCFF869BHB.tabix.bed.gz.dvc | 106.0 B | 350a9bf93c34a558dd9151cf917a4ce7 |
| ENCFF869BHB.tabix.bed.gz.tbi | 246.05 KB | e67f0103c2ece1c209370c85465246d0 |
| ENCFF869BHB.tabix.bed.gz.tbi.dvc | 110.0 B | 6c5460331db7c87df5b4aa62a49a7eba |
| genomic_resource.yaml | 4.23 KB | ce3e994274a9a0478bb3448298877918 |
| genomic_resource_original.yaml | 4.07 KB | 95e797d110743140a271c2f7402418a1 |
| statistics/ |