TF_ChIP-seq_ENCSR407BPU
TF_ChIP-seq ENCSR407BPU [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF609" and target="ZNF609"]
×
| Id: | TF_ChIP-seq/ENCSR407BPU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR407BPU [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF609" and target="ZNF609"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF609 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN422IES|/analyses/ENCAN422IES/} has in progress subobject document {9ade02eb-bcdd-4578-b251-752c339914cf|/documents/9ade02eb-bcdd-4578-b251-752c339914cf/} audit_internal_action: Released analysis {ENCAN422IES|/analyses/ENCAN422IES/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF599EXO|/files/ENCFF599EXO/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF599EXO|/files/ENCFF599EXO/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.64. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF597LFS|/files/ENCFF597LFS/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF597LFS|/files/ENCFF597LFS/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.14. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF667MEL|/files/ENCFF667MEL/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.27 and a self consistency ratio of 2.54. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF900FRP|/files/ENCFF900FRP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.27 and a self consistency ratio of 2.54. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR407BPU | float |
TF_ChIP-seq_ENCSR407BPU |
TF_ChIP-seq ENCSR407BPU [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF609" and target="ZNF609"]
|
|
[10.3, 656] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF667MEL.bed.gz | 434.12 KB | a424cb38734bc31a25ecbd3f5980acbd |
| ENCFF667MEL.bed.gz.dvc | 100.0 B | 451b0d7ad44cfd33af841be9ac3594a6 |
| ENCFF667MEL.tabix.bed.gz | 336.72 KB | bb344bb42135415c584102dfaab5d6e6 |
| ENCFF667MEL.tabix.bed.gz.dvc | 106.0 B | 7933c652c43912e2bb3438cc7eb3a5da |
| ENCFF667MEL.tabix.bed.gz.tbi | 135.37 KB | 8e238ba45d297d6add04043fdbc727e1 |
| ENCFF667MEL.tabix.bed.gz.tbi.dvc | 110.0 B | 75eb99b3c311ab6d7278418edf685184 |
| genomic_resource.yaml | 5.49 KB | 415da1d6ea40e3bfaf966fa25daa2b1b |
| genomic_resource_original.yaml | 5.33 KB | d6e56f478c5efdf4b14683b305d60721 |
| statistics/ |