TF_ChIP-seq_ENCSR402XII
TF_ChIP-seq ENCSR402XII [biosample_summary="Homo sapiens K562" and target="CSDE1"]
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| Id: | TF_ChIP-seq/ENCSR402XII |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR402XII [biosamplesummary="Homo sapiens K562" and target="CSDE1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN445EFU|/analyses/ENCAN445EFU/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF058URJ|/files/ENCFF058URJ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF058URJ|/files/ENCFF058URJ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.25. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF497KAC|/files/ENCFF497KAC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF497KAC|/files/ENCFF497KAC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.86. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR402XII | float |
TF_ChIP-seq_ENCSR402XII |
TF_ChIP-seq ENCSR402XII [biosample_summary="Homo sapiens K562" and target="CSDE1"]
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[16.2, 2.42e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF117EWO.bed.gz | 109.08 KB | ed6df8f4fbfb9414d371a0b7f7608180 |
| ENCFF117EWO.bed.gz.dvc | 100.0 B | 33b099f3b9c03b0b1f59f835a681a34a |
| ENCFF117EWO.tabix.bed.gz | 76.11 KB | d4b2814634cff289740741540f29cfb7 |
| ENCFF117EWO.tabix.bed.gz.dvc | 105.0 B | e495cda63a2d23b9e9db4b8fa862fc29 |
| ENCFF117EWO.tabix.bed.gz.tbi | 48.81 KB | 24a36e4494871c867b5676ede6716a94 |
| ENCFF117EWO.tabix.bed.gz.tbi.dvc | 109.0 B | 0aabbb1cddf7f89d24f22defc20f745d |
| genomic_resource.yaml | 3.94 KB | 7008795efde5f93ce8a78e5c7acf21c1 |
| genomic_resource_original.yaml | 3.84 KB | 6fa6f96f5c6a43a1c7453ba41e6d9774 |
| statistics/ |