TF_ChIP-seq_ENCSR398TMP
TF_ChIP-seq ENCSR398TMP [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MYNN" and target="MYNN"]
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| Id: | TF_ChIP-seq/ENCSR398TMP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR398TMP [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MYNN" and target="MYNN"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens MYNN output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN475IKL|/analyses/ENCAN475IKL/} has in progress subobject document {70194946-89d3-4930-9c65-ef9fdbeb13f1|/documents/70194946-89d3-4930-9c65-ef9fdbeb13f1/} audit_internal_action: Released analysis {ENCAN475IKL|/analyses/ENCAN475IKL/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF808ZZE|/files/ENCFF808ZZE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 15495121 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting MYNN-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF233NDH|/files/ENCFF233NDH/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF233NDH|/files/ENCFF233NDH/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.29. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR398TMP | float |
TF_ChIP-seq_ENCSR398TMP |
TF_ChIP-seq ENCSR398TMP [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MYNN" and target="MYNN"]
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[6.66, 608] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF048GXO.bed.gz | 98.84 KB | 9c721e87f5a6e12511c7c36578252983 |
| ENCFF048GXO.bed.gz.dvc | 100.0 B | 754c9e8c97e131032f1399ac857b8d44 |
| ENCFF048GXO.tabix.bed.gz | 75.73 KB | be57991234382427ecb5aeda6d20f9bf |
| ENCFF048GXO.tabix.bed.gz.dvc | 105.0 B | 85a9d8ba59c14798f2fd8989d85ac11a |
| ENCFF048GXO.tabix.bed.gz.tbi | 44.85 KB | 5e326e8baa7b2be4cac5f40d40ce2651 |
| ENCFF048GXO.tabix.bed.gz.tbi.dvc | 109.0 B | 81c583185eba21e4a54a0af6433feeae |
| genomic_resource.yaml | 3.65 KB | e104a21b98ff680a342c75fa710ea0cf |
| genomic_resource_original.yaml | 3.49 KB | a4752514c6cfff334b91464388bd678b |
| statistics/ |