TF_ChIP-seq_ENCSR398RET
TF_ChIP-seq ENCSR398RET [biosample_summary="Homo sapiens endodermal cell" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR398RET |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR398RET [biosamplesummary="Homo sapiens endodermal cell" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN611VRW|/analyses/ENCAN611VRW/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF023GBA|/files/ENCFF023GBA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF023GBA|/files/ENCFF023GBA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.04. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF656HQI|/files/ENCFF656HQI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR398RET | float |
TF_ChIP-seq_ENCSR398RET |
TF_ChIP-seq ENCSR398RET [biosample_summary="Homo sapiens endodermal cell" and target="CTCF"]
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[9.71, 823] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF834JBV.bed.gz | 1.87 MB | 5ed17f6324cc6804cf9babf0c5ca875c |
| ENCFF834JBV.bed.gz.dvc | 101.0 B | fa15759f13effad4e9775f587103d902 |
| ENCFF834JBV.tabix.bed.gz | 1.38 MB | 419290be21afcc84316b43eeb45355e4 |
| ENCFF834JBV.tabix.bed.gz.dvc | 107.0 B | e9befb9aaef5ce966550ef8bf86dcee8 |
| ENCFF834JBV.tabix.bed.gz.tbi | 497.4 KB | 0944a3744cd875f4449ee32110359995 |
| ENCFF834JBV.tabix.bed.gz.tbi.dvc | 110.0 B | 97fc6c778eef66790b832d30412987e6 |
| genomic_resource.yaml | 3.34 KB | 72ce485b86aa0c0c0b4e7878ec4db730 |
| genomic_resource_original.yaml | 3.24 KB | 3dbbfbf568006a8e869f41110d1652f2 |
| statistics/ |