TF_ChIP-seq_ENCSR397EOT
TF_ChIP-seq ENCSR397EOT [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF564" and target="ZNF564"]
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| Id: | TF_ChIP-seq/ENCSR397EOT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR397EOT [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF564" and target="ZNF564"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF564 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN304VDW|/analyses/ENCAN304VDW/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF543CXR|/files/ENCFF543CXR/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF543CXR|/files/ENCFF543CXR/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.03. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR397EOT | float |
TF_ChIP-seq_ENCSR397EOT |
TF_ChIP-seq ENCSR397EOT [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF564" and target="ZNF564"]
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[8, 524] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF310IWF.bed.gz | 304.41 KB | 35623e7d699a0f143e86b4d6574c4036 |
| ENCFF310IWF.bed.gz.dvc | 100.0 B | b38b3c24ea4d3a73d8e9d8fd960e9204 |
| ENCFF310IWF.tabix.bed.gz | 241.67 KB | a3fd43623d600f73290caf9b0bca73b1 |
| ENCFF310IWF.tabix.bed.gz.dvc | 106.0 B | 55b36944fe22d425de4d8fa0d7ec3cf1 |
| ENCFF310IWF.tabix.bed.gz.tbi | 100.49 KB | 942fe9b98364a19c5b3620d6ca444c91 |
| ENCFF310IWF.tabix.bed.gz.tbi.dvc | 110.0 B | c094472e970038fbdde0511b3072be3f |
| genomic_resource.yaml | 2.97 KB | 45517b16befcc84b0c50b04803b9722b |
| genomic_resource_original.yaml | 2.81 KB | 40a13b22792bfbc203e1b6a94df5d849 |
| statistics/ |