TF_ChIP-seq_ENCSR396XDF
TF_ChIP-seq ENCSR396XDF [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB24" and target="ZBTB24"]
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| Id: | TF_ChIP-seq/ENCSR396XDF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR396XDF [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB24" and target="ZBTB24"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB24 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN077BVX|/analyses/ENCAN077BVX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN077BVX|/analyses/ENCAN077BVX/} has in progress subobject document {323cfc8c-fe6c-47bd-bc1d-4eb95822d900|/documents/323cfc8c-fe6c-47bd-bc1d-4eb95822d900/} audit_warning: Processed alignments file {ENCFF597MJL|/files/ENCFF597MJL/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 17796327 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZBTB24-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF890PDO|/files/ENCFF890PDO/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 19587004 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZBTB24-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF597MJL|/files/ENCFF597MJL/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF597MJL|/files/ENCFF597MJL/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.21. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF890PDO|/files/ENCFF890PDO/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF890PDO|/files/ENCFF890PDO/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.06. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR396XDF | float |
TF_ChIP-seq_ENCSR396XDF |
TF_ChIP-seq ENCSR396XDF [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB24" and target="ZBTB24"]
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[6.91, 686] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF148RPN.bed.gz | 28.52 KB | 96ed2a85fac490b41f732a5a375db17a |
| ENCFF148RPN.bed.gz.dvc | 99.0 B | 03d235486b2d6197873693f0e8eaf5f6 |
| ENCFF148RPN.tabix.bed.gz | 20.5 KB | 79f677cbc4b260aa5f974ee76387f3f7 |
| ENCFF148RPN.tabix.bed.gz.dvc | 105.0 B | a8634afa6bdd0e459d9ea1fbafbc6e8f |
| ENCFF148RPN.tabix.bed.gz.tbi | 18.14 KB | 94ff89560199e4a864c217843f81d028 |
| ENCFF148RPN.tabix.bed.gz.tbi.dvc | 109.0 B | c2bea68e72e36ccdac44cf385261086f |
| genomic_resource.yaml | 5.42 KB | 0c9a9653672e9bd8c7023f622675aca4 |
| genomic_resource_original.yaml | 5.26 KB | 7af428ecb9e8c79bf657fe6db7c21ce9 |
| statistics/ |