TF_ChIP-seq_ENCSR395HWC
TF_ChIP-seq ENCSR395HWC [biosample_summary="Homo sapiens K562" and target="IKZF1"]
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| Id: | TF_ChIP-seq/ENCSR395HWC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR395HWC [biosamplesummary="Homo sapiens K562" and target="IKZF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN742ZZN|/analyses/ENCAN742ZZN/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF475POO|/files/ENCFF475POO/} processed by ChIP-seq ENCODE3 hg19 pipeline has 17159796 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting IKZF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF475POO|/files/ENCFF475POO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF475POO|/files/ENCFF475POO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.08. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF572MZM|/files/ENCFF572MZM/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF572MZM|/files/ENCFF572MZM/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 4.94. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR395HWC | float |
TF_ChIP-seq_ENCSR395HWC |
TF_ChIP-seq ENCSR395HWC [biosample_summary="Homo sapiens K562" and target="IKZF1"]
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[36.6, 9.97e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF968JVX.bed.gz | 833.54 KB | 684bdc0057a6241a64f889a8afb4cd56 |
| ENCFF968JVX.bed.gz.dvc | 100.0 B | 4f978a6ce1bed8b13e310a7358aa4d20 |
| ENCFF968JVX.tabix.bed.gz | 629.37 KB | c7a76d96c9506af60f38fd9586cddab2 |
| ENCFF968JVX.tabix.bed.gz.dvc | 106.0 B | 1f6b892caf293625514d6d98a0838a06 |
| ENCFF968JVX.tabix.bed.gz.tbi | 231.15 KB | 7f37e57c475f6489e955f92e525e72ca |
| ENCFF968JVX.tabix.bed.gz.tbi.dvc | 110.0 B | 596d6bcf218650e166ce7632bccf4c1a |
| genomic_resource.yaml | 4.43 KB | eb67771a83aa24cf30b055afb525f73d |
| genomic_resource_original.yaml | 4.34 KB | 5938a94b2fc2839254e3b7c4cc387131 |
| statistics/ |