TF_ChIP-seq_ENCSR392TWV
TF_ChIP-seq ENCSR392TWV [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB20" and target="ZBTB20"]
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| Id: | TF_ChIP-seq/ENCSR392TWV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR392TWV [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB20" and target="ZBTB20"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB20 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN988FWA|/analyses/ENCAN988FWA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF498OQY|/files/ENCFF498OQY/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline has 18851903 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZBTB20-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF802BRW|/files/ENCFF802BRW/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF802BRW|/files/ENCFF802BRW/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.89. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF498OQY|/files/ENCFF498OQY/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF498OQY|/files/ENCFF498OQY/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.62. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF592DOR|/files/ENCFF592DOR/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 1.53 and a self consistency ratio of 3.97. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR392TWV | float |
TF_ChIP-seq_ENCSR392TWV |
TF_ChIP-seq ENCSR392TWV [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB20" and target="ZBTB20"]
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[9.71, 512] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF592DOR.bed.gz | 337.12 KB | f68390717f0789f729316b6dd5e6fbf5 |
| ENCFF592DOR.bed.gz.dvc | 100.0 B | 82583a6a0621226b93bd66a170f1c69c |
| ENCFF592DOR.tabix.bed.gz | 255.09 KB | e8cf18bbbf65b1be46785d785a209809 |
| ENCFF592DOR.tabix.bed.gz.dvc | 106.0 B | 10aff7ca6950172f423bcbe8910b764e |
| ENCFF592DOR.tabix.bed.gz.tbi | 110.5 KB | 8a711d865d74ac960f07a582fca5a062 |
| ENCFF592DOR.tabix.bed.gz.tbi.dvc | 110.0 B | 1b08618a36386389986820f07e3954aa |
| genomic_resource.yaml | 5.25 KB | 2427972b190add7be64a1288d039a958 |
| genomic_resource_original.yaml | 5.08 KB | 3eb203ac496379910b63f7cfee89c6a7 |
| statistics/ |