TF_ChIP-seq_ENCSR392SFJ
TF_ChIP-seq ENCSR392SFJ [biosample_summary="Homo sapiens uterus tissue female adult (53 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR392SFJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR392SFJ [biosamplesummary="Homo sapiens uterus tissue female adult (53 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: pseudoreplicated IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN119PNH|/analyses/ENCAN119PNH/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF037HFH|/files/ENCFF037HFH/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF037HFH|/files/ENCFF037HFH/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR392SFJ | float |
TF_ChIP-seq_ENCSR392SFJ |
TF_ChIP-seq ENCSR392SFJ [biosample_summary="Homo sapiens uterus tissue female adult (53 years)" and target="CTCF"]
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[7.61, 1.72e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF282BOE.bed.gz | 578.63 KB | e7ce7c713fa139206baef0195a264860 |
| ENCFF282BOE.bed.gz.dvc | 100.0 B | 73cd08a77715c7af7001d1b6e5f1c72d |
| ENCFF282BOE.tabix.bed.gz | 410.45 KB | 841a27028f90307047d0d41c9ce5b008 |
| ENCFF282BOE.tabix.bed.gz.dvc | 106.0 B | 90051c0280b4ba43c571d2d041f8edb2 |
| ENCFF282BOE.tabix.bed.gz.tbi | 219.14 KB | 02727051f7763b726f537baf740fa87c |
| ENCFF282BOE.tabix.bed.gz.tbi.dvc | 110.0 B | 0821ae25dde929c6cd559a6df4ec4e89 |
| genomic_resource.yaml | 2.73 KB | 8ae93d0d92c22948b9f1ae1ccfc8e1cd |
| genomic_resource_original.yaml | 2.6 KB | 105a46fb348d2f30e426813d6ef4672e |
| statistics/ |