TF_ChIP-seq_ENCSR391ZKN
TF_ChIP-seq ENCSR391ZKN [biosample_summary="Homo sapiens Peyer''s patch tissue female adult (51 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR391ZKN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR391ZKN [biosamplesummary="Homo sapiens Peyer''s patch tissue female adult (51 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN093WJH|/analyses/ENCAN093WJH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN093WJH|/analyses/ENCAN093WJH/} has in progress subobject document {d31e212e-6994-4979-aca8-e0da95538187|/documents/d31e212e-6994-4979-aca8-e0da95538187/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF775BDI|/files/ENCFF775BDI/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF775BDI|/files/ENCFF775BDI/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.16. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR391ZKN | float |
TF_ChIP-seq_ENCSR391ZKN |
TF_ChIP-seq ENCSR391ZKN [biosample_summary="Homo sapiens Peyer''s patch tissue female adult (51 years)" and target="CTCF"]
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[7.76, 542] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF060DLE.bed.gz | 333.24 KB | e985a8230151322ef797c6ac218469fd |
| ENCFF060DLE.bed.gz.dvc | 100.0 B | f9e740db33b45b09d67dde766c351f96 |
| ENCFF060DLE.tabix.bed.gz | 236.98 KB | e44930a5ee1648612fa951fdc8105c99 |
| ENCFF060DLE.tabix.bed.gz.dvc | 106.0 B | 2354230addb66db813aa1331f31ce63b |
| ENCFF060DLE.tabix.bed.gz.tbi | 150.28 KB | ebf61c34f6e0a1de730593eb6790a485 |
| ENCFF060DLE.tabix.bed.gz.tbi.dvc | 110.0 B | efa660ef1b38eea60ce4a0b048e65f35 |
| genomic_resource.yaml | 2.96 KB | 49d8b3251c18a939329592a4d6be71f4 |
| genomic_resource_original.yaml | 2.83 KB | f32ee7e25f108c0d47bf30809ac67a77 |
| statistics/ |