TF_ChIP-seq_ENCSR387UWP
TF_ChIP-seq ENCSR387UWP [biosample_summary="Homo sapiens K562" and target="HDAC1"]
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| Id: | TF_ChIP-seq/ENCSR387UWP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR387UWP [biosamplesummary="Homo sapiens K562" and target="HDAC1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN471EBV|/analyses/ENCAN471EBV/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF530XAQ|/files/ENCFF530XAQ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 18086224 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting HDAC1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF530XAQ|/files/ENCFF530XAQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF530XAQ|/files/ENCFF530XAQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.44. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF233IID|/files/ENCFF233IID/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF233IID|/files/ENCFF233IID/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.86. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR387UWP | float |
TF_ChIP-seq_ENCSR387UWP |
TF_ChIP-seq ENCSR387UWP [biosample_summary="Homo sapiens K562" and target="HDAC1"]
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[33.6, 4.54e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF019ALY.bed.gz | 788.8 KB | 6e5b27278b7140bede72c439e1f952d4 |
| ENCFF019ALY.bed.gz.dvc | 100.0 B | 0264dc16e0df6080306d68cd5ae6cecc |
| ENCFF019ALY.tabix.bed.gz | 634.01 KB | ed683414573156d97fe58ea269f3d364 |
| ENCFF019ALY.tabix.bed.gz.dvc | 106.0 B | 0fcf977cb16da252f9a3e34c0afa068b |
| ENCFF019ALY.tabix.bed.gz.tbi | 219.5 KB | bff0cb5b76280f6942e73b680fb4c0d4 |
| ENCFF019ALY.tabix.bed.gz.tbi.dvc | 110.0 B | e274df58bea85e428b26b88a2dff0d35 |
| genomic_resource.yaml | 4.43 KB | 5cc21243bf04ae3309c200d4f3a36bea |
| genomic_resource_original.yaml | 4.34 KB | ca4c06f502b612b74d30cb76eff28f3d |
| statistics/ |