TF_ChIP-seq_ENCSR387TUH
TF_ChIP-seq ENCSR387TUH [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EEA1" and target="EEA1"]
×
| Id: | TF_ChIP-seq/ENCSR387TUH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR387TUH [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EEA1" and target="EEA1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens EEA1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN842DXN|/analyses/ENCAN842DXN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN842DXN|/analyses/ENCAN842DXN/} has in progress subobject document {ac9c864e-72fb-4e40-9908-aa7efcd69627|/documents/ac9c864e-72fb-4e40-9908-aa7efcd69627/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF981NSO|/files/ENCFF981NSO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF981NSO|/files/ENCFF981NSO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.33. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF823LUA|/files/ENCFF823LUA/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF823LUA|/files/ENCFF823LUA/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.25. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF217STG|/files/ENCFF217STG/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.42 and a self consistency ratio of 3.50. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF958VUU|/files/ENCFF958VUU/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.42 and a self consistency ratio of 3.50. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR387TUH | float |
TF_ChIP-seq_ENCSR387TUH |
TF_ChIP-seq ENCSR387TUH [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EEA1" and target="EEA1"]
|
|
[10.9, 473] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF217STG.bed.gz | 166.6 KB | 18ab477376eb84934bea55ce072f3242 |
| ENCFF217STG.bed.gz.dvc | 100.0 B | da11ec272f1821237a2fbff181070b67 |
| ENCFF217STG.tabix.bed.gz | 128.27 KB | f5a673de1daa10693f5356a18ab04276 |
| ENCFF217STG.tabix.bed.gz.dvc | 106.0 B | 9f5b9582c21630c471f3c1bb875278a9 |
| ENCFF217STG.tabix.bed.gz.tbi | 63.38 KB | da07a4f638904579320cf32569b4466a |
| ENCFF217STG.tabix.bed.gz.tbi.dvc | 109.0 B | 8f1a624dae11e7d502832ff196b31ab5 |
| genomic_resource.yaml | 5.48 KB | 3545722d0d4c4c2180b519a5185c6075 |
| genomic_resource_original.yaml | 5.32 KB | 0e008d45af9e93bb53b9764ef27558b1 |
| statistics/ |