TF_ChIP-seq_ENCSR387BVC
TF_ChIP-seq ENCSR387BVC [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens DDIT3" and target="DDIT3"]
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| Id: | TF_ChIP-seq/ENCSR387BVC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR387BVC [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens DDIT3" and target="DDIT3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens DDIT3 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN251YZI|/analyses/ENCAN251YZI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN251YZI|/analyses/ENCAN251YZI/} has in progress subobject document {eda66f8f-abf1-46a5-9454-df74fc47a3db|/documents/eda66f8f-abf1-46a5-9454-df74fc47a3db/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF669QFH|/files/ENCFF669QFH/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF669QFH|/files/ENCFF669QFH/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.80. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR387BVC | float |
TF_ChIP-seq_ENCSR387BVC |
TF_ChIP-seq ENCSR387BVC [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens DDIT3" and target="DDIT3"]
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[16.6, 2.49e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF869RFC.bed.gz | 77.36 KB | e6561828d2304fe8359416adc06b1524 |
| ENCFF869RFC.bed.gz.dvc | 99.0 B | 061fb25777bc3be106499d8c0c43891d |
| ENCFF869RFC.tabix.bed.gz | 51.89 KB | e34e4fbbcc0c662287692a50864c0e41 |
| ENCFF869RFC.tabix.bed.gz.dvc | 105.0 B | f76e6970ae540ef22017af188c23667c |
| ENCFF869RFC.tabix.bed.gz.tbi | 40.35 KB | 69e62f597e02dbd1e163d8d4f979c62d |
| ENCFF869RFC.tabix.bed.gz.tbi.dvc | 109.0 B | 905b1307da214d234df327aa534f0bac |
| genomic_resource.yaml | 3.17 KB | 8d8884cfc29ea0b25e1241b18605b8a1 |
| genomic_resource_original.yaml | 3.01 KB | 49992a4ed163d790e46076d8b07369a0 |
| statistics/ |