TF_ChIP-seq_ENCSR386YIH
TF_ChIP-seq ENCSR386YIH [biosample_summary="Homo sapiens liver tissue female child (4 years)" and target="SP1"]
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| Id: | TF_ChIP-seq/ENCSR386YIH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR386YIH [biosamplesummary="Homo sapiens liver tissue female child (4 years)" and target="SP1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female child (4 years) output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN481RHF|/analyses/ENCAN481RHF/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF299MPV|/files/ENCFF299MPV/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF299MPV|/files/ENCFF299MPV/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.53. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR386YIH | float |
TF_ChIP-seq_ENCSR386YIH |
TF_ChIP-seq ENCSR386YIH [biosample_summary="Homo sapiens liver tissue female child (4 years)" and target="SP1"]
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[9.49, 816] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF017YUI.bed.gz | 1.04 MB | 6d927fefe02424dcffe488b1873c853e |
| ENCFF017YUI.bed.gz.dvc | 101.0 B | bb06ebeab37389cd67d61379d9c25780 |
| ENCFF017YUI.tabix.bed.gz | 764.84 KB | 99437bdbbf38480f1ac734b3c61608a2 |
| ENCFF017YUI.tabix.bed.gz.dvc | 106.0 B | 36aaca34ef09e5e11a5ecc1c1b4f345f |
| ENCFF017YUI.tabix.bed.gz.tbi | 268.51 KB | b1acb76dd431fc2477d39a62c8ea9797 |
| ENCFF017YUI.tabix.bed.gz.tbi.dvc | 110.0 B | 203b09802bb786de82fefcd70654ce03 |
| genomic_resource.yaml | 2.71 KB | b938a8fb85eff6f6dc16ef9aa4ccb36c |
| genomic_resource_original.yaml | 2.59 KB | 714f61c65365509990a229a5013e6eec |
| statistics/ |