TF_ChIP-seq_ENCSR386UBO
TF_ChIP-seq ENCSR386UBO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARID4A" and target="ARID4A"]
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| Id: | TF_ChIP-seq/ENCSR386UBO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR386UBO [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARID4A" and target="ARID4A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ARID4A output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN572CTN|/analyses/ENCAN572CTN/} has in progress subobject document {ce93ce08-26f5-4701-80ef-3f089b38f3f6|/documents/ce93ce08-26f5-4701-80ef-3f089b38f3f6/} audit_internal_action: Released analysis {ENCAN572CTN|/analyses/ENCAN572CTN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF663TNR|/files/ENCFF663TNR/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF663TNR|/files/ENCFF663TNR/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.54. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF258MNE|/files/ENCFF258MNE/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.84 and a self consistency ratio of 3.97. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF142DIE|/files/ENCFF142DIE/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.84 and a self consistency ratio of 3.97. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR386UBO | float |
TF_ChIP-seq_ENCSR386UBO |
TF_ChIP-seq ENCSR386UBO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARID4A" and target="ARID4A"]
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[14.9, 741] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF258MNE.bed.gz | 777.3 KB | dfb7ac653ef128775c34cae5fd1c230c |
| ENCFF258MNE.bed.gz.dvc | 100.0 B | 64422c75b79f43bdce4f1c0b34127415 |
| ENCFF258MNE.tabix.bed.gz | 629.73 KB | 509d2ee7fe41bdc7cf646193aab16de9 |
| ENCFF258MNE.tabix.bed.gz.dvc | 106.0 B | 46827b828421f20b1b3394d03442497d |
| ENCFF258MNE.tabix.bed.gz.tbi | 166.88 KB | 8d3276414af99617ac3fc58ed6be1ece |
| ENCFF258MNE.tabix.bed.gz.tbi.dvc | 110.0 B | 874feefcf898ff847100d7194b6f2b99 |
| genomic_resource.yaml | 4.23 KB | 21c055501cc30dd4ed2c7cb0ff210366 |
| genomic_resource_original.yaml | 4.06 KB | ad9039e0dbf3cce031945c5e69c343f1 |
| statistics/ |