TF_ChIP-seq_ENCSR384YOP
TF_ChIP-seq ENCSR384YOP [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MZF1" and target="MZF1"]
×
| Id: | TF_ChIP-seq/ENCSR384YOP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR384YOP [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MZF1" and target="MZF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens MZF1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN092PFO|/analyses/ENCAN092PFO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF868LEC|/files/ENCFF868LEC/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF868LEC|/files/ENCFF868LEC/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.12. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF660BOR|/files/ENCFF660BOR/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF660BOR|/files/ENCFF660BOR/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.81. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF689CDE|/files/ENCFF689CDE/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 1.22 and a self consistency ratio of 3.10. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR384YOP | float |
TF_ChIP-seq_ENCSR384YOP |
TF_ChIP-seq ENCSR384YOP [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MZF1" and target="MZF1"]
|
|
[9.34, 367] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF689CDE.bed.gz | 77.0 KB | 35d7627a3cd6238b629fe78b6dcf7b6b |
| ENCFF689CDE.bed.gz.dvc | 99.0 B | 3310474e523022c867dfb05e01d9c73e |
| ENCFF689CDE.tabix.bed.gz | 54.85 KB | 688cbd1689f3c4bc0bdc420d60f00c0c |
| ENCFF689CDE.tabix.bed.gz.dvc | 105.0 B | 8eec320245614f97c8cb0c58c549f1d5 |
| ENCFF689CDE.tabix.bed.gz.tbi | 34.93 KB | 3a2fee22972754021e1173d159d43129 |
| ENCFF689CDE.tabix.bed.gz.tbi.dvc | 109.0 B | d3a6b3c021a3aa5a81af9892227fb09b |
| genomic_resource.yaml | 4.74 KB | 9952ac6d5be859758806799083e6bbeb |
| genomic_resource_original.yaml | 4.58 KB | e059be0bf1a59fcde244d8d02b9af37f |
| statistics/ |