TF_ChIP-seq_ENCSR384SQB
TF_ChIP-seq ENCSR384SQB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF25" and target="ZNF25"]
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| Id: | TF_ChIP-seq/ENCSR384SQB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR384SQB [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF25" and target="ZNF25"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF25 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN336TLC|/analyses/ENCAN336TLC/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN336TLC|/analyses/ENCAN336TLC/} has in progress subobject document {a37a4f1e-6c9b-4346-bf86-a6d5919b43a1|/documents/a37a4f1e-6c9b-4346-bf86-a6d5919b43a1/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF039ACO|/files/ENCFF039ACO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF039ACO|/files/ENCFF039ACO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.75. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF751VZC|/files/ENCFF751VZC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF751VZC|/files/ENCFF751VZC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.71. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR384SQB | float |
TF_ChIP-seq_ENCSR384SQB |
TF_ChIP-seq ENCSR384SQB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF25" and target="ZNF25"]
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[10.4, 538] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF706SJT.bed.gz | 132.28 KB | f389a1f0f1378faf7df994809547bf6a |
| ENCFF706SJT.bed.gz.dvc | 100.0 B | 46eb6952156ab5d88f86045b09b20e27 |
| ENCFF706SJT.tabix.bed.gz | 98.96 KB | bd3d0e0be3ccf96a53a3dd4867dca05f |
| ENCFF706SJT.tabix.bed.gz.dvc | 106.0 B | 2799a29d7c128fa51037797335e1b977 |
| ENCFF706SJT.tabix.bed.gz.tbi | 51.24 KB | a850a1ecc251747e982f45760959fc01 |
| ENCFF706SJT.tabix.bed.gz.tbi.dvc | 109.0 B | 0c8294dd0705763a1a7eba15e928edac |
| genomic_resource.yaml | 4.44 KB | d2d21cd875e111d0f617c6a16c2ddc7e |
| genomic_resource_original.yaml | 4.28 KB | af4db0c012eb75a9845565b174d0a63b |
| statistics/ |