TF_ChIP-seq_ENCSR384LYW
TF_ChIP-seq ENCSR384LYW [biosample_summary="Homo sapiens hepatocyte originated from H9" and target="EZH2"]
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| Id: | TF_ChIP-seq/ENCSR384LYW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR384LYW [biosamplesummary="Homo sapiens hepatocyte originated from H9" and target="EZH2"] |
| Description: |
status: archived biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN282WPT|/analyses/ENCAN282WPT/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF144YCB|/files/ENCFF144YCB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF144YCB|/files/ENCFF144YCB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.26. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF635YAT|/files/ENCFF635YAT/}, {ENCFF324UNA|/files/ENCFF324UNA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.20 and a self consistency ratio of 2.85. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF709XCX|/files/ENCFF709XCX/}, {ENCFF176ZNI|/files/ENCFF176ZNI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.20 and a self consistency ratio of 2.85. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR384LYW | float |
TF_ChIP-seq_ENCSR384LYW |
TF_ChIP-seq ENCSR384LYW [biosample_summary="Homo sapiens hepatocyte originated from H9" and target="EZH2"]
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[8.51, 183] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF324UNA.bed.gz | 211.49 KB | cb1ad56a1183abf396d2778fb4c665e7 |
| ENCFF324UNA.bed.gz.dvc | 100.0 B | 0955dd7f97709454dfbca0100ab93d59 |
| ENCFF324UNA.tabix.bed.gz | 139.11 KB | f88b8c22bc5507a2e8bfdc8ed1c6919e |
| ENCFF324UNA.tabix.bed.gz.dvc | 106.0 B | 7727d79418ab36349eed750f475eede3 |
| ENCFF324UNA.tabix.bed.gz.tbi | 39.76 KB | 7e0a2dd09c8d79929510590d54d17f33 |
| ENCFF324UNA.tabix.bed.gz.tbi.dvc | 109.0 B | 53aba9dca834a15eec4f0a06dd3e9332 |
| genomic_resource.yaml | 3.81 KB | 16c47dc0f5ae9d5fe27d36e039bfc7fd |
| genomic_resource_original.yaml | 3.7 KB | 8f5b1c6e904c5510ae01e67f92822a0a |
| statistics/ |