TF_ChIP-seq_ENCSR382XLA
TF_ChIP-seq ENCSR382XLA [biosample_summary="Homo sapiens HepG2" and target="ZFP36"]
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| Id: | TF_ChIP-seq/ENCSR382XLA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR382XLA [biosamplesummary="Homo sapiens HepG2" and target="ZFP36"] |
| Description: |
status: released biological_replicates: Rep 2, Rep 3 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF166GKK|/files/ENCFF166GKK/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN204RZR|/analyses/ENCAN204RZR/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF015EFN|/files/ENCFF015EFN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 17652928 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZFP36-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF166GKK|/files/ENCFF166GKK/}, {ENCFF179REL|/files/ENCFF179REL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.50 and a self consistency ratio of 3.02. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF909NYG|/files/ENCFF909NYG/}, {ENCFF322CDM|/files/ENCFF322CDM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.50 and a self consistency ratio of 3.02. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR382XLA | float |
TF_ChIP-seq_ENCSR382XLA |
TF_ChIP-seq ENCSR382XLA [biosample_summary="Homo sapiens HepG2" and target="ZFP36"]
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[5.16, 420] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF166GKK.bed.gz | 69.08 KB | 674e667542f57f3f61ebe683ea4fcf7a |
| ENCFF166GKK.bed.gz.dvc | 99.0 B | dfc82155023003991ade0c1a000ccb6b |
| ENCFF166GKK.tabix.bed.gz | 47.56 KB | 6deda33b1a9c4739fafc2aa395fa7635 |
| ENCFF166GKK.tabix.bed.gz.dvc | 105.0 B | 7681d5f1852e6227d7134477cc607f95 |
| ENCFF166GKK.tabix.bed.gz.tbi | 39.08 KB | 93a234d760eda5a3997477e9db00f6ac |
| ENCFF166GKK.tabix.bed.gz.tbi.dvc | 109.0 B | 2d512fb530da518db3c730ba6d6c6235 |
| genomic_resource.yaml | 3.7 KB | 563870e2acaf43ba9fabbaf86dde9ceb |
| genomic_resource_original.yaml | 3.61 KB | 74dc09d4e693c316cb61c69744ae7879 |
| statistics/ |