TF_ChIP-seq_ENCSR382PVA
TF_ChIP-seq ENCSR382PVA [biosample_summary="Homo sapiens HepG2" and target="GTF2F1"]
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| Id: | TF_ChIP-seq/ENCSR382PVA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR382PVA [biosamplesummary="Homo sapiens HepG2" and target="GTF2F1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Released analysis {ENCAN588REX|/analyses/ENCAN588REX/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF599TWF|/files/ENCFF599TWF/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Processed alignments file {ENCFF199NEL|/files/ENCFF199NEL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 10840146 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting GTF2F1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF418SGE|/files/ENCFF418SGE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 12896664 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting GTF2F1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF418SGE|/files/ENCFF418SGE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF418SGE|/files/ENCFF418SGE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 4.70. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR382PVA | float |
TF_ChIP-seq_ENCSR382PVA |
TF_ChIP-seq ENCSR382PVA [biosample_summary="Homo sapiens HepG2" and target="GTF2F1"]
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[4.47, 347] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF599TWF.bed.gz | 117.13 KB | de595a5cc6b307c2c604c16391fa2265 |
| ENCFF599TWF.bed.gz.dvc | 100.0 B | 938015a08046b8e8d2e680395dd06eab |
| ENCFF599TWF.tabix.bed.gz | 88.22 KB | 4dd166df0a8acd976dc11ceb795f863c |
| ENCFF599TWF.tabix.bed.gz.dvc | 105.0 B | bd163ddd35f2179d854d4b358fb0fbb7 |
| ENCFF599TWF.tabix.bed.gz.tbi | 49.17 KB | a7f7e4de7eda0606663a673c50745bfd |
| ENCFF599TWF.tabix.bed.gz.tbi.dvc | 109.0 B | 178bf39511e741bfab66ee028d071610 |
| genomic_resource.yaml | 3.83 KB | fe9916c3c346a76e2e5057ab2bbab92f |
| genomic_resource_original.yaml | 3.73 KB | 832f6f28567bf9bff15a7f09505a50e5 |
| statistics/ |