TF_ChIP-seq_ENCSR382MOM
TF_ChIP-seq ENCSR382MOM [biosample_summary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="YY1"]
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| Id: | TF_ChIP-seq/ENCSR382MOM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR382MOM [biosamplesummary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="YY1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (32 years) with nonobstructive coronary artery disease output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN185YHQ|/analyses/ENCAN185YHQ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF430WBQ|/files/ENCFF430WBQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF430WBQ|/files/ENCFF430WBQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.86. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR382MOM | float |
TF_ChIP-seq_ENCSR382MOM |
TF_ChIP-seq ENCSR382MOM [biosample_summary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="YY1"]
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[7.91, 1.11e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF566WSG.bed.gz | 985.36 KB | 1bd5d50abbe1d858675db04c9d86fd4a |
| ENCFF566WSG.bed.gz.dvc | 101.0 B | c805a898d114852d022a1cba77cf49d2 |
| ENCFF566WSG.tabix.bed.gz | 732.6 KB | fbbb6983707aa5c815bd4fe2c21e6bad |
| ENCFF566WSG.tabix.bed.gz.dvc | 106.0 B | 816de1a7c1e9f79558ba5894457c22fa |
| ENCFF566WSG.tabix.bed.gz.tbi | 237.79 KB | 9117dba64903ebce8c0d0781fba44e66 |
| ENCFF566WSG.tabix.bed.gz.tbi.dvc | 110.0 B | 23045bba2fbeb18a8692ac51edc6268c |
| genomic_resource.yaml | 2.93 KB | 7ff017d363a0fae306613f1aba42e051 |
| genomic_resource_original.yaml | 2.77 KB | 1c9148324ae59df4ef9eda03d4fe5140 |
| statistics/ |