TF_ChIP-seq_ENCSR380WJL
TF_ChIP-seq ENCSR380WJL [biosample_summary="Homo sapiens colonic mucosa tissue female adult (41 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR380WJL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR380WJL [biosamplesummary="Homo sapiens colonic mucosa tissue female adult (41 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (41 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN975XUV|/analyses/ENCAN975XUV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF070TTR|/files/ENCFF070TTR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF070TTR|/files/ENCFF070TTR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.58. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR380WJL | float |
TF_ChIP-seq_ENCSR380WJL |
TF_ChIP-seq ENCSR380WJL [biosample_summary="Homo sapiens colonic mucosa tissue female adult (41 years)" and target="CTCF"]
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[5, 254] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF663OEV.bed.gz | 522.75 KB | 50c259b329c1b17a6588af1cbdc12dd5 |
| ENCFF663OEV.bed.gz.dvc | 100.0 B | a6d2ec08fc76d0ab3e0c8c75927d2747 |
| ENCFF663OEV.tabix.bed.gz | 444.44 KB | 785d3265074e591ccda4c547bd53c1fa |
| ENCFF663OEV.tabix.bed.gz.dvc | 106.0 B | 062ef40cb5de36c95bb60f58c4ca0a30 |
| ENCFF663OEV.tabix.bed.gz.tbi | 203.44 KB | 5f2b31a5f8758396b816ca67726a4957 |
| ENCFF663OEV.tabix.bed.gz.tbi.dvc | 110.0 B | be2cae6bdea5c45048eda9380b864ba9 |
| genomic_resource.yaml | 2.75 KB | 0f84748e4afdfa2759c73d9ded05009b |
| genomic_resource_original.yaml | 2.62 KB | 5452b9de177304aeece87f573fb8aba0 |
| statistics/ |