TF_ChIP-seq_ENCSR377GZS
TF_ChIP-seq ENCSR377GZS [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP90" and target="ZFP90"]
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| Id: | TF_ChIP-seq/ENCSR377GZS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR377GZS [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP90" and target="ZFP90"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZFP90 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN054CLS|/analyses/ENCAN054CLS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF235GTV|/files/ENCFF235GTV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF235GTV|/files/ENCFF235GTV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.94. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF273CAF|/files/ENCFF273CAF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF273CAF|/files/ENCFF273CAF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.43. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF519NHL|/files/ENCFF519NHL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.19 and a self consistency ratio of 2.32. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR377GZS | float |
TF_ChIP-seq_ENCSR377GZS |
TF_ChIP-seq ENCSR377GZS [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP90" and target="ZFP90"]
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[13.3, 643] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF519NHL.bed.gz | 325.1 KB | 4130d2be91ec32f6bb07db40470babd2 |
| ENCFF519NHL.bed.gz.dvc | 100.0 B | 32ae8d6ed9bc0828dfcb6c7ffc19bb9b |
| ENCFF519NHL.tabix.bed.gz | 249.75 KB | becc80d1de9dcec6668c8feeefc182f5 |
| ENCFF519NHL.tabix.bed.gz.dvc | 106.0 B | f5f8c7aac503d414ac5e0244ee768ab0 |
| ENCFF519NHL.tabix.bed.gz.tbi | 102.14 KB | 6b4066ba2e784e3d21697cc97829882c |
| ENCFF519NHL.tabix.bed.gz.tbi.dvc | 110.0 B | 125d344e9857aeaf8c65cef045895d79 |
| genomic_resource.yaml | 4.75 KB | 1daad18314d8f99d0c1cfb97f84f2262 |
| genomic_resource_original.yaml | 4.59 KB | 715728b104b876fe8e4f7c6c5fc32b27 |
| statistics/ |