TF_ChIP-seq_ENCSR376XAV
TF_ChIP-seq ENCSR376XAV [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD3" and target="SMAD3"]
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| Id: | TF_ChIP-seq/ENCSR376XAV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR376XAV [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD3" and target="SMAD3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SMAD3 output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN170JZU|/analyses/ENCAN170JZU/} has in progress subobject document {a967a28a-a54f-43e6-9663-a5bd8efe2bea|/documents/a967a28a-a54f-43e6-9663-a5bd8efe2bea/} audit_internal_action: Released analysis {ENCAN170JZU|/analyses/ENCAN170JZU/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF975GAC|/files/ENCFF975GAC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF975GAC|/files/ENCFF975GAC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.15. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF089XMF|/files/ENCFF089XMF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF089XMF|/files/ENCFF089XMF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.61. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR376XAV | float |
TF_ChIP-seq_ENCSR376XAV |
TF_ChIP-seq ENCSR376XAV [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD3" and target="SMAD3"]
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[14.2, 2.42e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF718DSJ.bed.gz | 141.17 KB | 20ae398fd04e24d5a1004d32c84049cc |
| ENCFF718DSJ.bed.gz.dvc | 100.0 B | b948d2c7be942af09d6c5b0618efea1e |
| ENCFF718DSJ.tabix.bed.gz | 91.14 KB | 7921ef7993341a2b3a14871d40e5e3f9 |
| ENCFF718DSJ.tabix.bed.gz.dvc | 105.0 B | 3349f74bba9e96e956ac29bff66d3607 |
| ENCFF718DSJ.tabix.bed.gz.tbi | 61.19 KB | c4539b5c33afab7ce1393e7b8f0e50ea |
| ENCFF718DSJ.tabix.bed.gz.tbi.dvc | 109.0 B | 35a66ac1056846c7753bd6a3a7e76b3d |
| genomic_resource.yaml | 4.45 KB | 664708d706ed2f7ae444186ca654a6c1 |
| genomic_resource_original.yaml | 4.29 KB | 1be4d262b2283da884f318690e59302e |
| statistics/ |