TF_ChIP-seq_ENCSR376RCX
TF_ChIP-seq ENCSR376RCX [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens GMEB1" and target="GMEB1"]
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| Id: | TF_ChIP-seq/ENCSR376RCX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR376RCX [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens GMEB1" and target="GMEB1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens GMEB1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN282GNB|/analyses/ENCAN282GNB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN282GNB|/analyses/ENCAN282GNB/} has in progress subobject document {4365db73-ebd8-4dd8-a963-f3bee1a46262|/documents/4365db73-ebd8-4dd8-a963-f3bee1a46262/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF151VSH|/files/ENCFF151VSH/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF151VSH|/files/ENCFF151VSH/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.36. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF282HHS|/files/ENCFF282HHS/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF282HHS|/files/ENCFF282HHS/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.58. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR376RCX | float |
TF_ChIP-seq_ENCSR376RCX |
TF_ChIP-seq ENCSR376RCX [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens GMEB1" and target="GMEB1"]
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[16.1, 1.39e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF863WFD.bed.gz | 178.79 KB | cd50d0046af99c5ffc29f611176f0bd0 |
| ENCFF863WFD.bed.gz.dvc | 100.0 B | 85eced404f97dc434f63a0c72d925f8f |
| ENCFF863WFD.tabix.bed.gz | 123.99 KB | ff422455890cf32a27623a6229ad3761 |
| ENCFF863WFD.tabix.bed.gz.dvc | 106.0 B | 719723b101f1c15a26eda7abf28f9cfb |
| ENCFF863WFD.tabix.bed.gz.tbi | 78.94 KB | 5ac5e52a8e92818f460d6f9f1f4d11c1 |
| ENCFF863WFD.tabix.bed.gz.tbi.dvc | 109.0 B | b36af02517257859934043ebb51e284f |
| genomic_resource.yaml | 4.44 KB | 23b50225bc417443a15b718898173b86 |
| genomic_resource_original.yaml | 4.28 KB | 3dcfc21c89d59c6fd792bda03b32d583 |
| statistics/ |