TF_ChIP-seq_ENCSR376FMN
TF_ChIP-seq ENCSR376FMN [biosample_summary="Homo sapiens HepG2" and target="EHMT2"]
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| Id: | TF_ChIP-seq/ENCSR376FMN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR376FMN [biosamplesummary="Homo sapiens HepG2" and target="EHMT2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN069AIK|/analyses/ENCAN069AIK/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF117ZDX|/files/ENCFF117ZDX/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 17064498 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting EHMT2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF307JJT|/files/ENCFF307JJT/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 15894408 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting EHMT2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF855VUF|/files/ENCFF855VUF/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline have a rescue ratio of 1.62 and a self consistency ratio of 5.20. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR376FMN | float |
TF_ChIP-seq_ENCSR376FMN |
TF_ChIP-seq ENCSR376FMN [biosample_summary="Homo sapiens HepG2" and target="EHMT2"]
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[5.62, 356] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF855VUF.bed.gz | 205.17 KB | 15c4630966a7a3a16309bdc145fe014a |
| ENCFF855VUF.bed.gz.dvc | 100.0 B | b0fc93291710621ae087ceeb8e89c121 |
| ENCFF855VUF.tabix.bed.gz | 158.5 KB | e75803c6774543887d8d789b437c2b40 |
| ENCFF855VUF.tabix.bed.gz.dvc | 106.0 B | f7c630e4aa8243ffe003e84c7c4e66d6 |
| ENCFF855VUF.tabix.bed.gz.tbi | 73.61 KB | 30ce06d0376df89c7e9e81e7e5c16e21 |
| ENCFF855VUF.tabix.bed.gz.tbi.dvc | 109.0 B | c0a7125658c0e814265f96d79913d922 |
| genomic_resource.yaml | 2.88 KB | cd30111fed87099c9056d4cb1f6111b2 |
| genomic_resource_original.yaml | 2.79 KB | 8d94ee0717ec85078e2375ec5ff6ac18 |
| statistics/ |