TF_ChIP-seq_ENCSR374MAS
TF_ChIP-seq ENCSR374MAS [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PITX1" and target="PITX1"]
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| Id: | TF_ChIP-seq/ENCSR374MAS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR374MAS [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PITX1" and target="PITX1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens PITX1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN208HOF|/analyses/ENCAN208HOF/} has in progress subobject document {f8b405ec-d43a-4d89-82c9-ef9bd829b7ed|/documents/f8b405ec-d43a-4d89-82c9-ef9bd829b7ed/} audit_internal_action: Released analysis {ENCAN208HOF|/analyses/ENCAN208HOF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF457NET|/files/ENCFF457NET/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF457NET|/files/ENCFF457NET/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.92. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF991LJV|/files/ENCFF991LJV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF991LJV|/files/ENCFF991LJV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.04. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR374MAS | float |
TF_ChIP-seq_ENCSR374MAS |
TF_ChIP-seq ENCSR374MAS [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PITX1" and target="PITX1"]
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[13.9, 670] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF954EXR.bed.gz | 502.19 KB | 86e9887361932b9a552bae5e0e970feb |
| ENCFF954EXR.bed.gz.dvc | 100.0 B | 86e100ca59755ac546f79f82feb420c3 |
| ENCFF954EXR.tabix.bed.gz | 388.72 KB | e7d3bca49b328038509d9d8e947a82cf |
| ENCFF954EXR.tabix.bed.gz.dvc | 106.0 B | 13005ff1699ebede61d08c73245c0e67 |
| ENCFF954EXR.tabix.bed.gz.tbi | 153.89 KB | 4e7ff5fe8ad66c653144d98faa45e012 |
| ENCFF954EXR.tabix.bed.gz.tbi.dvc | 110.0 B | 0e9873c528192277cd277fc4e87cb9b5 |
| genomic_resource.yaml | 4.44 KB | a3f9536710a862faa81977ec9b7d2bbe |
| genomic_resource_original.yaml | 4.28 KB | b3a15ab6303c44cba49530d7a2f86514 |
| statistics/ |