TF_ChIP-seq_ENCSR372IML
TF_ChIP-seq ENCSR372IML [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens SP1" and target="SP1"]
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| Id: | TF_ChIP-seq/ENCSR372IML |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR372IML [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens SP1" and target="SP1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SP1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN987OPZ|/analyses/ENCAN987OPZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF608XJG|/files/ENCFF608XJG/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF608XJG|/files/ENCFF608XJG/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.39. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF415LYV|/files/ENCFF415LYV/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF415LYV|/files/ENCFF415LYV/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.28. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR372IML | float |
TF_ChIP-seq_ENCSR372IML |
TF_ChIP-seq ENCSR372IML [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens SP1" and target="SP1"]
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[10.8, 639] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF412ERW.bed.gz | 420.87 KB | a03b1cc52202015b7bb35c64935f57f1 |
| ENCFF412ERW.bed.gz.dvc | 100.0 B | 3ad7e530dbbfbf17ac8fb3846d3d59e6 |
| ENCFF412ERW.tabix.bed.gz | 346.87 KB | bad3ff99117789dcc16b54c24497a269 |
| ENCFF412ERW.tabix.bed.gz.dvc | 106.0 B | 6caae5c47c9574e2db524fe4f36d21f4 |
| ENCFF412ERW.tabix.bed.gz.tbi | 113.42 KB | b9745041972d70121c2b80efba53c825 |
| ENCFF412ERW.tabix.bed.gz.tbi.dvc | 110.0 B | e26e342a6d20e168bf240b6bd802b1c0 |
| genomic_resource.yaml | 4.21 KB | 08257871af0ea518eb27534e842b64ff |
| genomic_resource_original.yaml | 4.05 KB | 59aab6bbe4482ff280e5e13ca5386999 |
| statistics/ |